| ID | Fold | PDBID | PDB annotation | Length | RFam ID |
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| 3CGP_B | 1 | 3CGP | RNA (5'-R(*CP*GP*CP*UP*AP*CP*UP*AP*AP*CP*GP*CP*G)-3') | 13 | - |
| 3CGQ_A | 1 | 3CGQ | RNA (5'-R(*GP*CP*GP*CP*GP*(PSU)P*AP*GP*UP*AP*GP*C)-3') | 12 | - |
| 3CGQ_B | 1 | 3CGQ | RNA (5'-R(*CP*GP*CP*UP*AP*CP*UP*AP*AP*CP*GP*CP*G)-3') | 13 | - |
| 3CGR_A | 1 | 3CGR | RNA (5'-R(*GP*CP*GP*CP*GP*GP*(PSU)P*AP*GP*UP*GP*C)-3') | 12 | - |
| 3CGR_B | 1 | 3CGR | RNA (5'-R(*CP*GP*CP*AP*CP*UP*AP*AP*CP*CP*GP*CP*G)-3') | 13 | - |
| 3CGS_A | 1 | 3CGS | RNA (5'-R(*GP*CP*GP*CP*GP*(PSU)P*AP*GP*UP*AP*GP*C)-3') | 12 | - |
| 3CGS_B | 1 | 3CGS | RNA (5'-R(*CP*GP*CP*UP*AP*CP*UP*GP*AP*CP*GP*CP*G)-3') | 13 | - |
| 3CIY_C | 129 | 3CIY | 46-MER | 46 | - |
| 3CIY_D | 129 | 3CIY | 46-MER | 46 | - |
| 3CJZ_A | 1 | 3CJZ | RNA (5'-R(*GP*GP*AP*CP*GP*(M2G)P*AP*CP*GP*UP*CP*CP*U)-3') | 13 | - |
| 3CJZ_B | 1 | 3CJZ | RNA (5'-R(*GP*GP*AP*CP*GP*(M2G)P*AP*CP*GP*UP*CP*CP*U)-3') | 13 | - |
| 3CMA_0 | 53 | 3CMA | 23S RIBOSOMAL RNA | 2923 | RF02540 |
| 3CMA_9 | 27 | 3CMA | 5S RIBOSOMAL RNA | 122 | RF00001 |
| 3CME_0 | 53 | 3CME | 50S RIBOSOMAL RNA | 2923 | RF02540 |
| 3CME_9 | 27 | 3CME | 5S RIBOSOMAL RNA | 122 | RF00001 |
| 3CPW_0 | 53 | 3CPW | 23S RIBOSOMAL RNA | 2922 | RF02540 |
| 3CPW_9 | 27 | 3CPW | 5S RIBOSOMAL RNA | 122 | RF00001 |
| 3CQS_A | 1 | 3CQS | 13-mer substrate strand with 3'-OH, 2',5'-phosphodiester covalently linking 5th and 6th nucleotides | 13 | - |
| 3CQS_B | 152 | 3CQS | 29-mer ribozyme strand with S9L synthetic linker at 13th position | 30 | - |
| 3CQS_C | 152 | 3CQS | 19-mer ribozyme strand | 19 | - |